Dataset

Data used in this practical were collected from the following publication: Guida, A., Lindstädt, C., Maguire, S. L., Ding, C., Higgins, D. G., Corton, N. J., Berriman, M., et al. (2011). Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis. Guida et al. BMC Genomics 2011

The authors used high throughput technologies (microarrays and high throughput sequencing) to determine the transcriptional profile of the pathogenic yeast Candida parapsilosis growing in several conditions including media, temperature and oxygen concentrations.

You will use the datasets related to the study of the hypoxic (low oxygen) response in C. parapsilosis.

The raw sequencing files located into the projet data folder of the IFB-core Cluster : /shared/projects/2528_ens_master2lf_fgat/rnaseq/ where retrieved from the EBI European Electronic Archive using the study accession number PRJNA154483.